Pan-Tetris: an interactive visualisation for Pan-genomes
نویسندگان
چکیده
منابع مشابه
PGAP: pan-genomes analysis pipeline
SUMMARY With the rapid development of DNA sequencing technology, increasing bacteria genome data enable the biologists to dig the evolutionary and genetic information of prokaryotic species from pan-genome sight. Therefore, the high-efficiency pipelines for pan-genome analysis are mostly needed. We have developed a new pan-genome analysis pipeline (PGAP), which can perform five analytic functio...
متن کاملPANNOTATOR: an automated tool for annotation of pan-genomes.
Due to next-generation sequence technologies, sequencing of bacterial genomes is no longer one of the main bottlenecks in bacterial research and the number of new genomes deposited in public databases continues to increase at an accelerating rate. Among these new genomes, several belong to the same species and were generated for pan-genomic studies. A pan-genomic study allows investigation of s...
متن کاملTransposable elements and the plant pan-genomes.
The comparative sequencing of several grass genomes has revealed that transposable elements are largely responsible for extensive variation in both intergenic and local genic content, not only between closely related species but also among individuals within a species. These observations indicate that a single genome sequence might not reflect the entire genomic complement of a species, and pro...
متن کاملRPAN: rice pan-genome browser for ∼3000 rice genomes
A pan-genome is the union of the gene sets of all the individuals of a clade or a species and it provides a new dimension of genome complexity with the presence/absence variations (PAVs) of genes among these genomes. With the progress of sequencing technologies, pan-genome study is becoming affordable for eukaryotes with large-sized genomes. The Asian cultivated rice, Oryza sativa L., is one of...
متن کاملVideo Streaming with Interactive Pan/Tilt/Zoom
High-spatial-resolution videos offer the possibility of viewing an arbitrary region-of-interest (RoI) interactively. The user can pan/tilt/zoomwhile watching the video. This chapter presents spatial-random-access-enabled video compression that encodes the content such that arbitrary RoIs corresponding to different zoom factors can be extracted from the compressed bit-stream. The chapter also co...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: BMC Bioinformatics
سال: 2015
ISSN: 1471-2105
DOI: 10.1186/1471-2105-16-s11-s3